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Walbaum, 1792) broodstocks reared in three different hatcheries by RAPD-PCR method.

Year 2005, Volume: 22 Issue: 1, 25 - 30, 01.03.2005

Süleyman Akhan Mehmet Ali Canyurt

Abstract

Keywords

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References

  • Allendorf, F. W., F. M. Utter, 1979. Population genetics, p. 407-454. In: W.S. Hoar, D.J. Randal and J.R. Brett (Eds), Fish Physiology, Vol. VIII.. Acedemic Press, New York. 786p.
  • Ardren, W. R., S. Borer, F. Thrower, E. J. Joyce, A. R. Kapuscinski, 1999. Inheritance of 12 microsatellite loci in Oncorhynchus mykiss. The American Genetic Association. 90:529-536.
  • Bardakci, F., D. O. Skibinski, 1994. Application of the RAPD technique in tilapia fish: species and subspecies identification. Heredity. 73:117-123.
  • Bardakci, F., 2000. The use of amplified polymorphic DNA (RAPD) markers in sex discrimination in nile tilapia, Oreochromis niloticus (Pisces: Cichlidae). Turkish J. of Biology. 24(2): 168-175.
  • Becerril, C., H. Acevado, M. Ferrero, F. Sanz, A. Castano, 2000. DNA fingerprint comparison of rainbow trout and RTG-2 cell line using random amplified polymorphic DNA. Ecotoxicology. 10:115-124.
  • Berkman, C. C., 2001. Ras1, RAG1, RAG3' and IGF2 RFLP Analysis of Some Hatchery Rainbow Trout (Oncorynchus mykiss) Populations in Turkey. MSc Thesis, Middle East Technical University. 88 p.
  • Bielawski, J. P., D. E. Pumo, 1997. Randomly amplified polymorphic DNA RAPD analysis of Atlantic Coast striped bass. Heredity. 78:32-40.
  • Bilgen, G., İ. Oğuz, M. Arabacı, S. Akhan, 2002. Determination of genetic diversity whithin and beetwen sea bream (Sparus aurata L., 1758) rared n two saperate hatchereries by RAPD-PCR method (in Turkish). TUBİTAK Project No VHAG 1673. 65p.
  • Borowsky, R. L., M. McClelland, R. Cheng, J. Welsh, 1995. Arbitrary primed DNA fingerprinting for phylogenetic reconstruction in vertebrates: the Xiphophorus model. Mol. Biol. Evol. 12: 1022-1032.
  • Brown, K. H., G. H. Thorgaard, 2002. Mitochondrial and nuclear inheritance in an androgenetic line of rainbow trout, Oncorhynchus mykiss. Aquaculture. 204: 323-335.
  • Busack, C. A., R. Halliburton, G. A. E. Gall, 1979. Electrophretic variation and differention in four strains of domesticated rainbow trout (Salmo gairdneri). Can. J. Genet. Cytol. 21: 81-94.
  • Caccone, A., G. Allegrucci, C. Fortunato, V. Sbordoni, 1997. Genetic differentiation within the European sea bass D. labrax as revealed by 14 RAPD-PCR assays. J. Hered. 88: 316-324.
  • Cagias, M. E., E. Vazquez, G. Blanco, J. A. Sanchez, 1999. Combined assessment of genetic variability in populations of brown trout (Salmo trutta L.) based on allozymes, microsatallites, and RAPD markers. Mar. Biotechnol. 1: 286-296.
  • Canyurt, M. A., 1985. Trout production (in Turkish). E.Ü. Ziraat Fakültesi Haber Bülteni. 43: 4-6.
  • Colihueque, N., P. Iturra, F. Estay, N. F. Diaz, 2001. Diploid chromosome number variations and sex chromosome polymorphism in five cultured strains of rainbow trout (Oncorhynchus mykiss). Aquaculture. 198:63-77.
  • Dinesh, K. R., W. K. Chan, T. M. Lim, V. P. E. Phon, 1993. RAPD analysis: an efficient method of DNA fingerprinting in fishes. Zool. Sci. 10: 849-854.
  • Dunnington, E. A. O. Gal, Y. Plotsky, A. Haberfeld, T. Kirk, A. Golberg, U. Lavi, A. Cahaner, P. B. Siegel, J. Hillel, 1990. DNA fingerprints of chickens selected for high and low weight. Animal Genetics. 21: 221- 231.
  • Estoup, A., P. Presa, F. Krieg, D. Vaiman, R. Guyomard, 1993. (CT)n and (GT)n microsatellites:A new class of genetic markers for Salmo trutta L. (Brown trout). Heredity. 71: 488-496.
  • Ferguson, M. M., R. G. Danzmann, S. K. A. Arndt, 1993. Mitocondrial DNA and allozyme variation in Ontario cultured rainbow trout spawning in different seasons. Aquaculture. 117: 237-259.
  • Ferguson, M. M., R. G. Danzmann, 1999. Inter-strain differences in the association between mitochondrial DNA haplotype and growt in cultured Ontario rainbow trout (Oncorhynchus mykiss). Aquaculture. 178: 245- 252.
  • Fishback, A. G., R. G. Danzmann, T. Sakamoto, M. M. Ferguson 1998. Optimization of semi-automated microsatallite multiplex polymerase chain reaction sytems for rainbow trout (Oncorhynchus mykiss). Aquaculture. 172: 247-254.
  • Flajshans, M., P. Rab, 1990. Chromosome study of Oncorhynchus mykiss kamploops. Aquaculture. 89: 1-8.
  • Gabrielsen, T. M., C. Brochmann, 1998. Sex after all: high levels of diversity detected in arctic clonal plant Saxifraga cernua using RAPD markers. Molecular Ecology. 7: 1701-1708.
  • Gall, G. A. E., P. A. Crandell, 1990. The rainbow trout. Aquaculture. 100: 1-10.
  • Gregg, R. E., O. E. Rhodes, G. Armstrong, 2001. A genetic analysis of the London strain of rainbow trout. Animal Genetics. 32: 210-214.
  • Gugerli, F., K. Eichenberger, J. J. Scheller, 1999. Promiscuity in populations of the cushion plant Saxifraga oppositifolia in the Swiss Alps as inferred from random amplified polymorphic DNA (RAPD). Molecular Ecology. 8: 453-461.
  • Guyomard, R., 1981. Electrophoretic variation in four French population of domesticated rainbow trout (Salmo gairdneri). Can. J. Genet. Cytol. 23: 33-47.
  • Hansen, M. M., K. D. Mensberg, G. Rasmussen, V. Simonsen, 1997. Genetic variation within and among Danish brown trout (Salmo trutta L.) hatchery strains, assessed by PCR-RFLP analysis of Mitochondrial DNA segments. Aquaculture. 153: 15-29.
  • Heath, D. D., S. Pollard, C. Herbinger, 2001. Genetic structure and relationships among steelhead trout (Oncorynchus mykiss) population in British Columbia. Heredity. 86: 618-627.
  • Iturra, P., J. F. Medrano., M. Bagley, N. Lam, N. Vergara, J. C. Marin, 1998. Identification of sex chromosome moleculer markers using RAPDs and florescent in situ hybridization in rainbow trout. Genetica. 101: 209-213.
  • Koh, T. L., G. Khoo, Q. L. Fan, V. P. E. Phang, 1999. Genetic diversity among wild forms and cultivated varieties of Discus (Symphysodon spp.) as revealed by amplified polymorphic DNA (RAPD) fingerprinting. Aquaculture. 173: 485-497.
  • Lanteri, S., I. Di Leo, M. G. Mameli, E. Portis, 2001. RAPD variation within and among populations of globe artichoke cultivar ‘Spinoso sardo’. Plant Breeding. 120: 243-246.
  • Liu, Z. J., P. Li, B. J. Argue, R. A. Dunham, 1999. Random amplified polymorphic DNA markers: usefulness for gene mapping and analysis of genetic variation of catfish. Aquacultıre. 174: 59-68.
  • Miller, M. P., 1997. Tools for population genetic analysis (TFPGA) 1.3: A Windows program for the analysis of allozyme and molecular population genetic data. Computer software distributed by author. Department of Biological Sciences Northern Arizona University Box 5640 Flagstaff, AZ 86011-5640.
  • Nei, M., 1978. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics. 89:583-590.
  • Nei, M., W. H. Li, 1979. Mathematical modeling for studying genetic variation in terms of restriction endonucleases. Proceed. of Nat. Acad. Sci. 76:5269-5273.
  • Ostberg, C. O., R. J. Rodriguez, 2002. Novel molecular markers differentiate Oncorynchus mykiss (rainbow trout and steelhead) and the O. clarki (cutthroat trout) subspecies. Molecular Ecology Notes. 2:197-202.
  • Palti, Y., J. E. Persons, G. H. Thorgaard, 1997. Assesment of genetic variability among strains of rainbow and cutthroat using multilocus DNA fingerprints. Aquaculture. 149: 47-56.
  • Partis, L., R. J. Wells, 1996. Identification of fish species using random amplified polymorphic DNA RAPD. Mol. Cell. Probes. 10: 435-441.
  • Postlethwait, J. H., S. L. Johnson, C. N. Midson, W. S. Talbot, M. Gates, E. W. Ballinger, D. Africa, R. Andrews, T. Carl, J. S. Eisen, 1994. A genetic linkage map for the zebrafish. Science. 264: 699-703.
  • Sultmann, H., W. E. Mayer, F. Figueroa, H. Tichy, J. Klein, 1995. Phylogenetic analysis of cichlid fishes using nuclear DNA markers. Mol. Biol. Evol. 12: 1033–1047.
  • Ulupınar, M., İ. Okumuş, 2002. Detection of chromosomal polymorphisms in rainbow trout (Oncorhynchus mykiss) cultured in commercial farms in northeast Black Sea region of Turkey (in Turkish). Turk. J. Vet. Anim. Sci., 26: 525-533.
  • Welsh, J., M. McCelland, 1990. Fingerprinting genomes using arbitrary primers. Nucl. AcidsRes. 18, 7213-7218.
  • Yıldırım, A., N. Kandemir, 2001. Genetic markers and methods (in Turkish), 334-363. In: S. Özcan, E. Gürel ve M. Babaoğlu (Derl.) Bitki Biyoteknolojisi, Selçuk Üniversitesi Vakfı Yayınları, Konya, 456s.
  • Young, W. P., P. A. Wheeler, V. H. Coryel, P. Keim, G. H. Thorgaard, 1998. A detailed linkage map of rainbow trout produced using double haploids. Genetics. 148:839-850.
  • Young, W. P., C. O. Ostberg, P. Keim, G. H. Thorgaard, 2001. Genetic characterization of hybridization and introgression between anadromus rainbow trout (Oncorhynchus mykiss irideus) and coastal cutthroat trout (O. clarki clarki). Molecular Ecology. 10:921-930.

A study on the determination of genetic variability between rainbow trout (Oncorhynchus mykiss

Year 2005, Volume: 22 Issue: 1, 25 - 30, 01.03.2005

Süleyman Akhan Mehmet Ali Canyurt

Abstract

Bu araştırmada RAPD-PCR yöntemi kullanılarak, üç farklı kuluçkahanedeki damızlık gökkuşağı alabalıkları (Oncorhynchus mykiss) arasında genetik çeşitliliğin belirlenmesi amaçlanmıştır. Muğla-Fethiye, Burdur-Gölhisar ve Denizli-Çameli yöresinde üretim yapan üç işletmeye ait toplam 45 damızlık balık materyal olarak kullanılmıştır. Üç populasyonda hesaplanan genetik benzerlik değerleri oldukça düşük bulunmuştur. Fethiye populasyonu içinde ortalama 0.429, Çameli populasyonu içinde 0.311 ve Gölhisar populasyounda 0.348 olarak hesaplanmıştır. Ortalama populasyon içi genetik farklılık değerleri ise Fethiye populasyonunda 0.571, Çameli populasyonunda 0.689 ve Gölhisar populasyonunda 0.652 olarak hesaplanmıştır. Populasyonlar arası genetik farklılık değeri olduça yüksek bulumuştur. En yüksek genetik farklılık değeri Fethiye-Gölhisar populasyonları arasında 0.752 olarak, en düşük ise Fethiye-Çameli populasyonları arasında 0.659 olarak belirlenmiştir

Keywords

Gökkuşağı alabalığı (Oncorhynchus mykiss) damızlık RAPD-PCR genetik çeşitlilik

References

  • Allendorf, F. W., F. M. Utter, 1979. Population genetics, p. 407-454. In: W.S. Hoar, D.J. Randal and J.R. Brett (Eds), Fish Physiology, Vol. VIII.. Acedemic Press, New York. 786p.
  • Ardren, W. R., S. Borer, F. Thrower, E. J. Joyce, A. R. Kapuscinski, 1999. Inheritance of 12 microsatellite loci in Oncorhynchus mykiss. The American Genetic Association. 90:529-536.
  • Bardakci, F., D. O. Skibinski, 1994. Application of the RAPD technique in tilapia fish: species and subspecies identification. Heredity. 73:117-123.
  • Bardakci, F., 2000. The use of amplified polymorphic DNA (RAPD) markers in sex discrimination in nile tilapia, Oreochromis niloticus (Pisces: Cichlidae). Turkish J. of Biology. 24(2): 168-175.
  • Becerril, C., H. Acevado, M. Ferrero, F. Sanz, A. Castano, 2000. DNA fingerprint comparison of rainbow trout and RTG-2 cell line using random amplified polymorphic DNA. Ecotoxicology. 10:115-124.
  • Berkman, C. C., 2001. Ras1, RAG1, RAG3' and IGF2 RFLP Analysis of Some Hatchery Rainbow Trout (Oncorynchus mykiss) Populations in Turkey. MSc Thesis, Middle East Technical University. 88 p.
  • Bielawski, J. P., D. E. Pumo, 1997. Randomly amplified polymorphic DNA RAPD analysis of Atlantic Coast striped bass. Heredity. 78:32-40.
  • Bilgen, G., İ. Oğuz, M. Arabacı, S. Akhan, 2002. Determination of genetic diversity whithin and beetwen sea bream (Sparus aurata L., 1758) rared n two saperate hatchereries by RAPD-PCR method (in Turkish). TUBİTAK Project No VHAG 1673. 65p.
  • Borowsky, R. L., M. McClelland, R. Cheng, J. Welsh, 1995. Arbitrary primed DNA fingerprinting for phylogenetic reconstruction in vertebrates: the Xiphophorus model. Mol. Biol. Evol. 12: 1022-1032.
  • Brown, K. H., G. H. Thorgaard, 2002. Mitochondrial and nuclear inheritance in an androgenetic line of rainbow trout, Oncorhynchus mykiss. Aquaculture. 204: 323-335.
  • Busack, C. A., R. Halliburton, G. A. E. Gall, 1979. Electrophretic variation and differention in four strains of domesticated rainbow trout (Salmo gairdneri). Can. J. Genet. Cytol. 21: 81-94.
  • Caccone, A., G. Allegrucci, C. Fortunato, V. Sbordoni, 1997. Genetic differentiation within the European sea bass D. labrax as revealed by 14 RAPD-PCR assays. J. Hered. 88: 316-324.
  • Cagias, M. E., E. Vazquez, G. Blanco, J. A. Sanchez, 1999. Combined assessment of genetic variability in populations of brown trout (Salmo trutta L.) based on allozymes, microsatallites, and RAPD markers. Mar. Biotechnol. 1: 286-296.
  • Canyurt, M. A., 1985. Trout production (in Turkish). E.Ü. Ziraat Fakültesi Haber Bülteni. 43: 4-6.
  • Colihueque, N., P. Iturra, F. Estay, N. F. Diaz, 2001. Diploid chromosome number variations and sex chromosome polymorphism in five cultured strains of rainbow trout (Oncorhynchus mykiss). Aquaculture. 198:63-77.
  • Dinesh, K. R., W. K. Chan, T. M. Lim, V. P. E. Phon, 1993. RAPD analysis: an efficient method of DNA fingerprinting in fishes. Zool. Sci. 10: 849-854.
  • Dunnington, E. A. O. Gal, Y. Plotsky, A. Haberfeld, T. Kirk, A. Golberg, U. Lavi, A. Cahaner, P. B. Siegel, J. Hillel, 1990. DNA fingerprints of chickens selected for high and low weight. Animal Genetics. 21: 221- 231.
  • Estoup, A., P. Presa, F. Krieg, D. Vaiman, R. Guyomard, 1993. (CT)n and (GT)n microsatellites:A new class of genetic markers for Salmo trutta L. (Brown trout). Heredity. 71: 488-496.
  • Ferguson, M. M., R. G. Danzmann, S. K. A. Arndt, 1993. Mitocondrial DNA and allozyme variation in Ontario cultured rainbow trout spawning in different seasons. Aquaculture. 117: 237-259.
  • Ferguson, M. M., R. G. Danzmann, 1999. Inter-strain differences in the association between mitochondrial DNA haplotype and growt in cultured Ontario rainbow trout (Oncorhynchus mykiss). Aquaculture. 178: 245- 252.
  • Fishback, A. G., R. G. Danzmann, T. Sakamoto, M. M. Ferguson 1998. Optimization of semi-automated microsatallite multiplex polymerase chain reaction sytems for rainbow trout (Oncorhynchus mykiss). Aquaculture. 172: 247-254.
  • Flajshans, M., P. Rab, 1990. Chromosome study of Oncorhynchus mykiss kamploops. Aquaculture. 89: 1-8.
  • Gabrielsen, T. M., C. Brochmann, 1998. Sex after all: high levels of diversity detected in arctic clonal plant Saxifraga cernua using RAPD markers. Molecular Ecology. 7: 1701-1708.
  • Gall, G. A. E., P. A. Crandell, 1990. The rainbow trout. Aquaculture. 100: 1-10.
  • Gregg, R. E., O. E. Rhodes, G. Armstrong, 2001. A genetic analysis of the London strain of rainbow trout. Animal Genetics. 32: 210-214.
  • Gugerli, F., K. Eichenberger, J. J. Scheller, 1999. Promiscuity in populations of the cushion plant Saxifraga oppositifolia in the Swiss Alps as inferred from random amplified polymorphic DNA (RAPD). Molecular Ecology. 8: 453-461.
  • Guyomard, R., 1981. Electrophoretic variation in four French population of domesticated rainbow trout (Salmo gairdneri). Can. J. Genet. Cytol. 23: 33-47.
  • Hansen, M. M., K. D. Mensberg, G. Rasmussen, V. Simonsen, 1997. Genetic variation within and among Danish brown trout (Salmo trutta L.) hatchery strains, assessed by PCR-RFLP analysis of Mitochondrial DNA segments. Aquaculture. 153: 15-29.
  • Heath, D. D., S. Pollard, C. Herbinger, 2001. Genetic structure and relationships among steelhead trout (Oncorynchus mykiss) population in British Columbia. Heredity. 86: 618-627.
  • Iturra, P., J. F. Medrano., M. Bagley, N. Lam, N. Vergara, J. C. Marin, 1998. Identification of sex chromosome moleculer markers using RAPDs and florescent in situ hybridization in rainbow trout. Genetica. 101: 209-213.
  • Koh, T. L., G. Khoo, Q. L. Fan, V. P. E. Phang, 1999. Genetic diversity among wild forms and cultivated varieties of Discus (Symphysodon spp.) as revealed by amplified polymorphic DNA (RAPD) fingerprinting. Aquaculture. 173: 485-497.
  • Lanteri, S., I. Di Leo, M. G. Mameli, E. Portis, 2001. RAPD variation within and among populations of globe artichoke cultivar ‘Spinoso sardo’. Plant Breeding. 120: 243-246.
  • Liu, Z. J., P. Li, B. J. Argue, R. A. Dunham, 1999. Random amplified polymorphic DNA markers: usefulness for gene mapping and analysis of genetic variation of catfish. Aquacultıre. 174: 59-68.
  • Miller, M. P., 1997. Tools for population genetic analysis (TFPGA) 1.3: A Windows program for the analysis of allozyme and molecular population genetic data. Computer software distributed by author. Department of Biological Sciences Northern Arizona University Box 5640 Flagstaff, AZ 86011-5640.
  • Nei, M., 1978. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics. 89:583-590.
  • Nei, M., W. H. Li, 1979. Mathematical modeling for studying genetic variation in terms of restriction endonucleases. Proceed. of Nat. Acad. Sci. 76:5269-5273.
  • Ostberg, C. O., R. J. Rodriguez, 2002. Novel molecular markers differentiate Oncorynchus mykiss (rainbow trout and steelhead) and the O. clarki (cutthroat trout) subspecies. Molecular Ecology Notes. 2:197-202.
  • Palti, Y., J. E. Persons, G. H. Thorgaard, 1997. Assesment of genetic variability among strains of rainbow and cutthroat using multilocus DNA fingerprints. Aquaculture. 149: 47-56.
  • Partis, L., R. J. Wells, 1996. Identification of fish species using random amplified polymorphic DNA RAPD. Mol. Cell. Probes. 10: 435-441.
  • Postlethwait, J. H., S. L. Johnson, C. N. Midson, W. S. Talbot, M. Gates, E. W. Ballinger, D. Africa, R. Andrews, T. Carl, J. S. Eisen, 1994. A genetic linkage map for the zebrafish. Science. 264: 699-703.
  • Sultmann, H., W. E. Mayer, F. Figueroa, H. Tichy, J. Klein, 1995. Phylogenetic analysis of cichlid fishes using nuclear DNA markers. Mol. Biol. Evol. 12: 1033–1047.
  • Ulupınar, M., İ. Okumuş, 2002. Detection of chromosomal polymorphisms in rainbow trout (Oncorhynchus mykiss) cultured in commercial farms in northeast Black Sea region of Turkey (in Turkish). Turk. J. Vet. Anim. Sci., 26: 525-533.
  • Welsh, J., M. McCelland, 1990. Fingerprinting genomes using arbitrary primers. Nucl. AcidsRes. 18, 7213-7218.
  • Yıldırım, A., N. Kandemir, 2001. Genetic markers and methods (in Turkish), 334-363. In: S. Özcan, E. Gürel ve M. Babaoğlu (Derl.) Bitki Biyoteknolojisi, Selçuk Üniversitesi Vakfı Yayınları, Konya, 456s.
  • Young, W. P., P. A. Wheeler, V. H. Coryel, P. Keim, G. H. Thorgaard, 1998. A detailed linkage map of rainbow trout produced using double haploids. Genetics. 148:839-850.
  • Young, W. P., C. O. Ostberg, P. Keim, G. H. Thorgaard, 2001. Genetic characterization of hybridization and introgression between anadromus rainbow trout (Oncorhynchus mykiss irideus) and coastal cutthroat trout (O. clarki clarki). Molecular Ecology. 10:921-930.
There are 46 citations in total.

Details

Primary Language Turkish
Journal Section Articles
Authors

Süleyman Akhan

Mehmet Ali Canyurt

Publication Date March 1, 2005
Submission Date December 7, 2015
Published in Issue Year 2005Volume: 22 Issue: 1

Cite

APA Akhan, S. ., & Canyurt, M. A. . (2005). A study on the determination of genetic variability between rainbow trout (Oncorhynchus mykiss. Ege Journal of Fisheries and Aquatic Sciences, 22(1), 25-30.