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Microsatellite polymorphism of natural sea bass (Dicentrarchus labrax) breeders.

Year 2009, Volume 26, Issue 2, 101 - 104, 01.06.2009

Abstract

References

  • Allegrucci, G., C., Fortunato, V., Sbordoni, 1997. Genetic structure and allozyme variation of sea bass (Dicentrarchus labrax, D. punctatus) in the Mediterranean Sea. Marine Biology. Vol. 128, 347-358.
  • Bahri-Sfar, L., C., Lemaire, O., C., Ben Hasisine, F., Bonhomme, 2000. Fragmentation of sea bass populations in the western and eastern Mediterranean as revealed by microsatellite popymorphism. The Royal Society 267. pp:929-935.
  • K. Belkhir, P. Borsa, J. Goudet, L. Chikhi and F., Bonhomme. 1996. Genetix, Version. 4.0-logiciel sous Windows TM pour la génétique des populations. Laboratoire Génome et Populations, CNRS UPR 9060, Université Montpellier 2, Montpellier, France. http://www.univ- montp2.fr/~genetix/genetix.htm.
  • Caccone, A., F., Allegrucci, C., Fortunato, V., Sbordoni, 1997. Genetic differantiation within European sea bass (D. labrax) as revealed by RAPD-PCR assays. The Journal of Heredity.88(4), 316-124.
  • Castilho, R., B., C., McAndrew, 2000. Microsatellite polymorphism in wild populations of European sea bass. Preliminary results, CHIEAM-Options Mediterraneennes. Pp.265-272.
  • Chistiakov, A. D., B., Hellemans, C., S., Haley, A., S.,Law, C., S., Tsigenepoulos, G., Kotoulas, D., Bertotto, A., Libertini, A., M.,F., Volckaert, 2005. A microsatellite linkage map of European sea bass. Genetics. 10.1534/genetics.104.039719.
  • Garcia de Leon, F. J., M., Canonne, E., Quilette, F., Bonhomme, B., Chatain, 1988. The application of microsatellite markers to breeding programmes in the sea bass, Dicentrarchus labrax. Aquaculture 159. pp. 300-316.
  • Garcia de Leon, F. J., J., F., Dallas, B,Chatain,. M., Canonne, J., J.,Versini, F., Bonhomme, 1995. Development and use of microsatellite markers in sea bass, Dicentrarchus labrax (Linneaus, 1758) (Perciformes: Serranidae). Molecular Marine Biology and Biotechnology 4. pp:62-68.
  • Haffray, P., C. S., Tsigenepoulos, F., Bonhomme, B., Chatain, A., Magoulas, M., Rye, A., Triantafyllidis, C., Triantaphyllidis, 2007. European sea bass- Dicentrarchus labrax. Genimpact Final Scientific Report.
  • Hansen, M.M., D.E., Ruzzante, E.E., Nielsen, K.L.D., Mensberg, 2001. Brown trout (Salmo trutta) stocking impact assessmentusing microsatellite DNA markers. Ecol. Appl. 11, 148–160.
  • Innocentiis, S., E., Miggiano, A., Ungaro, S., Livi, L., Sola, D., Crosetti, 2005. Geographical origin of individual breeders from gilthead sea bream (Sparus aurata) hatchery broodstocks inferred by microsatellites profiles. Aquaculture 247. pp.227-232.
  • Karahan, B., 2004. Comparing genotypic differences of wild and cultured sea bass (Dicentrarchus labrax, L. 1758) using microsatellites. (In Turkish). Doktora Tezi. E. Ü. Su Ürünleri Fakültesi, Yetiştiricilik Bölümü.
  • Karahan, B., E., Özcan-Gökçek, M., Hekimoğlu, 2007. Su ürünleri yetiştiriciliğinin genetik yapıya etkisi ve alınabilecek önlemler. Aquaculture&Fisheries, Sayı:8, 32-36.
  • Langella, O. 1999. Populations v. 1.2.30. GNU General Public License. http://bioinformatics.org/~tryphon/populations/.
  • Lopera-Barrero, M., N., J., A., Povh, P., R., Ribeiro, P., C., Gomes, C., B., Jacometo, T., S., Lopes, 2008. Comparison of DNA extraction protocols of fish fin and larvae samples: modified salt (NaCl) extraction. Short Communication. Ciencia e Investigacion Agraria 35 (1): 64-74.
  • Magoulas, A., 2003. Application of molecular markers to aquaculture and broodstock management with special emphasis on microsatellite DNA. CHIEM-Options Mediterraneeennes, pp:153-168.
  • Nei, M., T. Maruyama, C. I. Wu. 1983. Models of evolution of reproductive isolation. Genetics 103:557-579.
  • Nei, 1978. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89. pp:583-590.
  • Norris, A., T., D., G., Bradley, E., P., Cunningham, 2000. Parentage and relatedness determination in farmed Atlantic Salmon (Salmo salar) using microsatelite markers. Aquaculture 182. pp.73-83.
  • Sarropoulou, E., P., Sepulcre, B., L., Poisa, V., Mulero, J., Meseguer, A., Figueras, B., Novoa, V., Terzoglou, R., Reinhardt, A., Magoulas, G., Kotoulas, 2009. Profiling of infection specific mRNA transcripts of the European seabass Dicentrarchus labrax. BioMed Central (BMC). 10:157.
  • Wier, B., S., C., C,. Cockerham, 1984. Estimating F-statistics for the analysis of population structure, Evolution 38. pp:1358-1370.
  • Xiao-Gu, Z., Jin-Gou, Tong, X., Bang-Si, 2006. Applications of microsatellite markers in studies of genetics and breeding of fish. Chinese journal of agricultural biotechnology 3. pp.83-87.
  • Zhu, Z., Y., G., Lin, L., C., Lo, X., Y., Xu, F., Feng, R., Chou, G., H., Yue, 2006. Genetic analyse of Asian sea bass stocks using novel polymorphic microsatellites. Aquaculture 256. pp.167-173.

Doğal levrek (Dicentrarchus labrax) Anaçlarında Mikrosatelit Polimorfizmi.

Year 2009, Volume 26, Issue 2, 101 - 104, 01.06.2009

Abstract

Su ürünleri yetiştiriciliğinde eldeki stokların genetik yapısını tanımlamak, biyolojik çeşitliliğin korunması ve çiftliklerden doğaya kaçışın etkilerinin en aza indirilmesinin yanında, uygulanan seleksiyon yoluyla ıslah programlarının da uzun vadede yararlı sonuçlar ortaya çıkarması gibi açılardan önemlidir. Çalışmada iki kuluçkahanenin anaç stoklarının (Akvatek 149, Egemar 81 adet) genetik yapısı mikrosatelit polimorfizmi açısından karşılaştırılmış, lokuslara ait parametrelerin populasyonlara göre değiştiği gözlenmiştir. İncelenen 12 adet lokusun allel sayıları populasyonlar ayrı ayrı ele alındığında 3 ile 17 arasında değişmektedir. Akvatek için en polimorfik lokus DLA0064 (HG=0.9697, HB=0.8479), Egemar için DLA0070 (HG=0.8333, HB=0.8433) olarak belirlenmiştir. Tüm sonuçlara göre mikrosatelit polimorfizminin populasyonlara göre değiştiği söylenebilir

References

  • Allegrucci, G., C., Fortunato, V., Sbordoni, 1997. Genetic structure and allozyme variation of sea bass (Dicentrarchus labrax, D. punctatus) in the Mediterranean Sea. Marine Biology. Vol. 128, 347-358.
  • Bahri-Sfar, L., C., Lemaire, O., C., Ben Hasisine, F., Bonhomme, 2000. Fragmentation of sea bass populations in the western and eastern Mediterranean as revealed by microsatellite popymorphism. The Royal Society 267. pp:929-935.
  • K. Belkhir, P. Borsa, J. Goudet, L. Chikhi and F., Bonhomme. 1996. Genetix, Version. 4.0-logiciel sous Windows TM pour la génétique des populations. Laboratoire Génome et Populations, CNRS UPR 9060, Université Montpellier 2, Montpellier, France. http://www.univ- montp2.fr/~genetix/genetix.htm.
  • Caccone, A., F., Allegrucci, C., Fortunato, V., Sbordoni, 1997. Genetic differantiation within European sea bass (D. labrax) as revealed by RAPD-PCR assays. The Journal of Heredity.88(4), 316-124.
  • Castilho, R., B., C., McAndrew, 2000. Microsatellite polymorphism in wild populations of European sea bass. Preliminary results, CHIEAM-Options Mediterraneennes. Pp.265-272.
  • Chistiakov, A. D., B., Hellemans, C., S., Haley, A., S.,Law, C., S., Tsigenepoulos, G., Kotoulas, D., Bertotto, A., Libertini, A., M.,F., Volckaert, 2005. A microsatellite linkage map of European sea bass. Genetics. 10.1534/genetics.104.039719.
  • Garcia de Leon, F. J., M., Canonne, E., Quilette, F., Bonhomme, B., Chatain, 1988. The application of microsatellite markers to breeding programmes in the sea bass, Dicentrarchus labrax. Aquaculture 159. pp. 300-316.
  • Garcia de Leon, F. J., J., F., Dallas, B,Chatain,. M., Canonne, J., J.,Versini, F., Bonhomme, 1995. Development and use of microsatellite markers in sea bass, Dicentrarchus labrax (Linneaus, 1758) (Perciformes: Serranidae). Molecular Marine Biology and Biotechnology 4. pp:62-68.
  • Haffray, P., C. S., Tsigenepoulos, F., Bonhomme, B., Chatain, A., Magoulas, M., Rye, A., Triantafyllidis, C., Triantaphyllidis, 2007. European sea bass- Dicentrarchus labrax. Genimpact Final Scientific Report.
  • Hansen, M.M., D.E., Ruzzante, E.E., Nielsen, K.L.D., Mensberg, 2001. Brown trout (Salmo trutta) stocking impact assessmentusing microsatellite DNA markers. Ecol. Appl. 11, 148–160.
  • Innocentiis, S., E., Miggiano, A., Ungaro, S., Livi, L., Sola, D., Crosetti, 2005. Geographical origin of individual breeders from gilthead sea bream (Sparus aurata) hatchery broodstocks inferred by microsatellites profiles. Aquaculture 247. pp.227-232.
  • Karahan, B., 2004. Comparing genotypic differences of wild and cultured sea bass (Dicentrarchus labrax, L. 1758) using microsatellites. (In Turkish). Doktora Tezi. E. Ü. Su Ürünleri Fakültesi, Yetiştiricilik Bölümü.
  • Karahan, B., E., Özcan-Gökçek, M., Hekimoğlu, 2007. Su ürünleri yetiştiriciliğinin genetik yapıya etkisi ve alınabilecek önlemler. Aquaculture&Fisheries, Sayı:8, 32-36.
  • Langella, O. 1999. Populations v. 1.2.30. GNU General Public License. http://bioinformatics.org/~tryphon/populations/.
  • Lopera-Barrero, M., N., J., A., Povh, P., R., Ribeiro, P., C., Gomes, C., B., Jacometo, T., S., Lopes, 2008. Comparison of DNA extraction protocols of fish fin and larvae samples: modified salt (NaCl) extraction. Short Communication. Ciencia e Investigacion Agraria 35 (1): 64-74.
  • Magoulas, A., 2003. Application of molecular markers to aquaculture and broodstock management with special emphasis on microsatellite DNA. CHIEM-Options Mediterraneeennes, pp:153-168.
  • Nei, M., T. Maruyama, C. I. Wu. 1983. Models of evolution of reproductive isolation. Genetics 103:557-579.
  • Nei, 1978. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89. pp:583-590.
  • Norris, A., T., D., G., Bradley, E., P., Cunningham, 2000. Parentage and relatedness determination in farmed Atlantic Salmon (Salmo salar) using microsatelite markers. Aquaculture 182. pp.73-83.
  • Sarropoulou, E., P., Sepulcre, B., L., Poisa, V., Mulero, J., Meseguer, A., Figueras, B., Novoa, V., Terzoglou, R., Reinhardt, A., Magoulas, G., Kotoulas, 2009. Profiling of infection specific mRNA transcripts of the European seabass Dicentrarchus labrax. BioMed Central (BMC). 10:157.
  • Wier, B., S., C., C,. Cockerham, 1984. Estimating F-statistics for the analysis of population structure, Evolution 38. pp:1358-1370.
  • Xiao-Gu, Z., Jin-Gou, Tong, X., Bang-Si, 2006. Applications of microsatellite markers in studies of genetics and breeding of fish. Chinese journal of agricultural biotechnology 3. pp.83-87.
  • Zhu, Z., Y., G., Lin, L., C., Lo, X., Y., Xu, F., Feng, R., Chou, G., H., Yue, 2006. Genetic analyse of Asian sea bass stocks using novel polymorphic microsatellites. Aquaculture 256. pp.167-173.

Details

Primary Language Turkish
Journal Section Articles
Authors

Bilge KARAHAN This is me

Publication Date June 1, 2009
Application Date December 7, 2015
Acceptance Date September 29, 2021
Published in Issue Year 2009, Volume 26, Issue 2

Cite

APA Karahan, B. (2009). Doğal levrek (Dicentrarchus labrax) Anaçlarında Mikrosatelit Polimorfizmi. . Ege Journal of Fisheries and Aquatic Sciences , 26 (2) , 101-104 . Retrieved from http://www.egejfas.org/en/pub/issue/5003/67696