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Karadeniz Bölgesi (Türkiye) boyunca bazı akarsularda yaşayan Barbus tauricus Kessler, 1877 populasyonlarının mtDNA Sitokrom b sekans analizleri ile genetik yapısının belirlenmesi

Year 2019, Volume: 36 Issue: 1, 1 - 11, 15.03.2019
https://doi.org/10.12714/egejfas.2019.36.1.01

Abstract



Bu çalışma Karadeniz Bölgesi’ndeki farklı
alanlarda örneklenen Barbus tauricus
populasyonları arasındaki türiçi varyasyonları ortaya çıkarmak için
gerçekleştirilmiştir. Karadeniz Bölgesi’ndeki farklı içsulardan (Akçay
(Samsun),  Engiz Çayı (Samsun), Terme Çayı
(Samsun) Karadere (Trabzon) and Değirmenağzı Deresi (Düzce)) toplamda 250 örnek
yakalanmıştır.  Tür içi varyasyonlar mtDNA
cyt b sekansı kullanılarak
saptanmıştır. Popülasyonların genetik yapıları moleküler varyans analizi
(AMOVA) ile belirlenmiştir. Bu çalışmada GENBANK veri tabanından alınan
Cyprinus carpio L., 1758 (DQ868874.1)(dış
grup) ve diğer Barbus türleri
karşılaştırmalı analizlerde kullanılmıştır. Cyt b gen bölgesinin 1141 baz çiftlik toplam sekansı ve 11 haplotip
elde edilmiştir. AMOVA analizinden elde edilen moleküler veriler
B.tauricus türiçi
varyasyonun varlığını ve varyasyonun % 26.1 oranında gruplar arasında olduğunu
ortaya çıkarmıştır. Tüm populasyonlardan elde edilen FST değeri
populasyonlardaki genetik heterojeniteyi doğrulamaktadır (FST=
0.59310).
Genetik analizler, B. tauricus populasyonlarının coğrafik
olarak farklılıklar gösterdiğini ortaya çıkarmıştır.




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Determination of genetic structure in Barbus tauricus Kessler, 1877 populations inhabiting a few streams along the Black Sea Region (Turkey) inferred from mtDNA Cytochrome b gene sequence analysis

Year 2019, Volume: 36 Issue: 1, 1 - 11, 15.03.2019
https://doi.org/10.12714/egejfas.2019.36.1.01

Abstract



This study was carried out in order to determine the intras-pecies variation in Barbus tauricus populations sampled from different localities in the Black Sea Region. A total of 250 B. tauricus samples were collected from inland waters (Akçay Stream (Samsun),  Engiz Stream (Samsun), Terme Stream (Samsun) Karadere Stream (Trabzon) and Değirmenağzı Stream (Düzce)) of Black Sea Region. Intra-species variations in the species of B. tauricus were determined using mitochondrial DNA cyt b squencing. The population genetic structure was revealed by analyzing the molecular variance (AMOVA). For this study, a member of the related fish group, Cyprinus carpio L., 1758 (DQ868874.1)(as an outgroup) and other Barbus species from the GENBANK database was used in comparative analyses. Therefore, total sequence of 1141 bp of the cyt b gene region was obtained and 11 haplotypes were determined. The molecular data obtained by AMOVA revealed that there were intraspecific variations of B. tauricus and that 26.61% of the variation were among the populations. The FST value estimated for all populations and loci confirms genetic heterogeneity in B.tauricus populations (FST= 0.59310). Genetic analyses revealed that B. tauricus populations are geographically structured.




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Details

Primary Language English
Journal Section Articles
Authors

Melek Özpiçak 0000-0003-3506-4242

Nazmi Polat 0000-0001-9785-9927

Publication Date March 15, 2019
Submission Date April 17, 2018
Published in Issue Year 2019Volume: 36 Issue: 1

Cite

APA Özpiçak, M., & Polat, N. (2019). Determination of genetic structure in Barbus tauricus Kessler, 1877 populations inhabiting a few streams along the Black Sea Region (Turkey) inferred from mtDNA Cytochrome b gene sequence analysis. Ege Journal of Fisheries and Aquatic Sciences, 36(1), 1-11. https://doi.org/10.12714/egejfas.2019.36.1.01