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Year 2023, Volume: 6 Issue: 2, 143 - 147, 01.03.2023

Emel Özcan Gökçek Raziye Işık

https://doi.org/10.47115/bsagriculture.1223593

Abstract

Keywords

SNP FABP2 gene teleost variation

References

  • Alves‐Costa FA, Denovan‐Wright EM, Thisse C, Thisse B, Wright JM. 2008. Spatio‐temporal distribution of fatty acid‐binding protein 6 (fabp6) gene transcripts in the developing and adult zebrafish (Danio rerio). The FEBS J, 275(13): 3325-3334.
  • Andre M, Ando S, Ballagny C, Durliat M, Poupard G, Briancon C, Babin PJ. 2000. Intestinal fatty acid binding protein gene expression reveals the cephalocaudal patterning during zebrafish gut morphogenesis. Int J Dev Biol, 44: 249–252.
  • Besnard P, Niot I, Poirier H, Clement L, Bernard A. 2002. New insights into the fatty acid-binding protein (FABP) family in the small intestine. Mol Cell Biochem, 239: 139–147.
  • Chen X, Shi Z. 2009. Sequence analysis of the full-length cDNA and protein structure homology modeling of FABP2 from Paralichthys olivaceus. Bioinform Biol Insights, 3: 29–35.
  • Dawood M, Kramer LM, Shabbir MI, Reecy JM. 2021. Genome-wide association study for fatty acid composition in american angus cattle. Animals, 11(8): 2424.
  • FAO, 2022. Food and agriculture organization. Fisheries and aquaculture department. https://www.fao.org/fishery/en/statistics/software/fishstatj/en (access date: July 6, 2022).
  • Hall TA. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser, 41: 95-98.
  • Kaitetzidou E, Chatzifotis S, Antonopoulou E, Sarropoulou E. 2015. Identification, phylogeny, and function of fabp2 paralogs in two non-model teleost fish species. Marine Biotechnol, 17(5): 663-677.
  • Levy E, Menard D, Delvin E, Stan S, Mitchell, G, Lambert, M, Ziv E, Feoli-Fonseca, JC, Seidman E. 2001. The polymorphism at codon 54 of the FABP2 gene increases fat absorption in human intestinal explants. J Bio Chem, 276: 39679.
  • Özcan Gökçek E, Işık R. 2020. Associations between genetic variants of the insulin-like growth factor I (IGF-I) gene and growth traits in European sea bass (Dicentrarchus labrax, L.). Fish Physiol Biochem, 46: 1131–1138.
  • Pagani F, Baralle FE. 2004. Genomic variants in exons and introns: identifying the splicing spoilers. Nat Rev Genet, 5(5): 389-396.
  • R Core Team. 2013. R: A language and environment for statistical computing.
  • Sharma MK, Denovan-Wright EM, Degrave A, Thisse C, Thisse B, Wright JM. 2004. Sequence, linkage mapping and early developmental expression of the intestinal-type fatty acid-binding protein gene (fabp2) from zebrafish (Danio rerio). Comparat Biochem Physiol Part B: Biochem Molec Biol, 138(4): 391-398.
  • Tamura K, Stecher G, and Kumar S. 2021. MEGA11: Molecular evolutionary genetics analysis version 11. Molec Biol Evolut, 38: 3022-3027.
  • Tran TTH, Nguyen HT, Le BTN, Tran PH, Van Nguyen S, Kim OTP. 2021. Characterization of single nucleotide polymorphism in IGF1 and IGF1R genes associated with growth traits in striped catfish (Pangasianodon hypophthalmus Sauvage, 1878). Aquaculture, 538: 736542.
  • Vandeputte M, Gagnaire PA, Allal F. 2019. The European sea bass: a key marine fish model in the wild and in aquaculture. Anim Genet, 50(3): 195-206.
  • Venkatachalam AB, Parmar MB, Wright JM. 2017. Evolution of the duplicated intracellular lipid-binding protein genes of teleost fishes. Molec Genet Genom, 292(4): 699-727.
  • Venold FF, Penn MH, Thorsen J, Gu J, Kortner TM, Krogdahl Å, Bakke AM. 2013. Intestinal fatty acid binding protein (fabp2) in Atlantic salmon (Salmo salar): Localization and alteration of expression during development of diet induced enteritis. Comparat Biochem Physiol Part A: Molec Integrat Physiol, 164(1): 229-240.
  • Wan L, Dong L, Xiao S, Han Z, Wang X, Wang Z. 2018. Genomewide association study for economic traits in the large yellow croaker with different numbers of extreme phenotypes. J Genet, 97(4): 887-895.
  • Wang Q, Li H, Liu S, Wang G, Wang Y. 2005. Cloning and tissue expression of chicken heart fatty acid-binding protein and intestine fatty acid-binding protein genes. Anim Biotechnol, 16: 191–201.
  • Wang Y, Wang X, Meng X, Wang H, Jiang Z, Qiu X. 2014. Identification of two SNPs in myostatin (MSTN) gene of Takifugu rubripes and their association with growth traits. Molecul Cellular Prob, 28(4): 200-203.
  • Xia JH, Lin G, He X, Liu P, Liu F, Sun F, Yue GH. 2013. Whole genome scanning and association mapping identified a significant association between growth and a SNP in the IFABP-a gene of the Asian seabass. BMC Genom, 14(1): 1-12.
  • Zhang Y, Cao X, Gao J. 2019. Cloning of fatty acid-binding protein 2 (fabp2) in loach (Misgurnus anguillicaudatus) and its expression in response to dietary oxidized fish oil. Comparat Biochem Physiol Part B: Biochem Molec Biol, 229: 26-33.
  • Zhang Y, Zhang J, Ren Y, Lu R, Yang L, Nie G. 2020. Tracing the evolution of fatty acid‐binding proteins (FABPs) in organisms with a heterogeneous fat distribution. FEBS Open Bio, 10(5): 861-872.
  • Zhou Z, Han K, Wu Y, Bai H, Ke Q, Pu F, Xu P. 2019. Genome-wide association study of growth and body-shape-related traits in large yellow croaker (Larimichthys crocea) using ddRAD sequencing. Marine Biotechnol, 21(5): 655-670.

Intestinal Fatty Acid Binding Protein Gene Variation in European Sea Bass (Dicentrarchus labrax)

Year 2023, Volume: 6 Issue: 2, 143 - 147, 01.03.2023

Emel Özcan Gökçek Raziye Işık

https://doi.org/10.47115/bsagriculture.1223593

Abstract

Fatty acid binding proteins (FABPs), which belong to the multigene family, play an important role in homeostasis, lipid uptake and transport in tissues. Intestinal fatty acid binding protein (I-FABP) is a small cytosolic protein and is highly active in intracellular fatty acid metabolism in fish gut. The European Sea bass (Dicentrarchus labrax) is an important commercial marine fish species in the Mediterranean region. In the present study, the partial I-FABP gene region of European sea bass was sequenced for detecting single nucleotide polymorphism (SNP) using DNA sequencing. We identified one SNP (g.2450T>C) in the noncoding region of the I-FABP gene in European sea bass. In this study, the relationship between the g.2450T>C locus of the I-FABP (fabp2) gene and body length, post-anal length, body weight and fillet weight was found significant (P<0.05). According to these results, the g.2450T>C locus in I-FABP which could affect growth and muscle fat content, can be used for marker-assisted selection (MAS) studies in European sea bass.

Keywords

SNP FABP2 gene Teleost Variation

References

  • Alves‐Costa FA, Denovan‐Wright EM, Thisse C, Thisse B, Wright JM. 2008. Spatio‐temporal distribution of fatty acid‐binding protein 6 (fabp6) gene transcripts in the developing and adult zebrafish (Danio rerio). The FEBS J, 275(13): 3325-3334.
  • Andre M, Ando S, Ballagny C, Durliat M, Poupard G, Briancon C, Babin PJ. 2000. Intestinal fatty acid binding protein gene expression reveals the cephalocaudal patterning during zebrafish gut morphogenesis. Int J Dev Biol, 44: 249–252.
  • Besnard P, Niot I, Poirier H, Clement L, Bernard A. 2002. New insights into the fatty acid-binding protein (FABP) family in the small intestine. Mol Cell Biochem, 239: 139–147.
  • Chen X, Shi Z. 2009. Sequence analysis of the full-length cDNA and protein structure homology modeling of FABP2 from Paralichthys olivaceus. Bioinform Biol Insights, 3: 29–35.
  • Dawood M, Kramer LM, Shabbir MI, Reecy JM. 2021. Genome-wide association study for fatty acid composition in american angus cattle. Animals, 11(8): 2424.
  • FAO, 2022. Food and agriculture organization. Fisheries and aquaculture department. https://www.fao.org/fishery/en/statistics/software/fishstatj/en (access date: July 6, 2022).
  • Hall TA. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser, 41: 95-98.
  • Kaitetzidou E, Chatzifotis S, Antonopoulou E, Sarropoulou E. 2015. Identification, phylogeny, and function of fabp2 paralogs in two non-model teleost fish species. Marine Biotechnol, 17(5): 663-677.
  • Levy E, Menard D, Delvin E, Stan S, Mitchell, G, Lambert, M, Ziv E, Feoli-Fonseca, JC, Seidman E. 2001. The polymorphism at codon 54 of the FABP2 gene increases fat absorption in human intestinal explants. J Bio Chem, 276: 39679.
  • Özcan Gökçek E, Işık R. 2020. Associations between genetic variants of the insulin-like growth factor I (IGF-I) gene and growth traits in European sea bass (Dicentrarchus labrax, L.). Fish Physiol Biochem, 46: 1131–1138.
  • Pagani F, Baralle FE. 2004. Genomic variants in exons and introns: identifying the splicing spoilers. Nat Rev Genet, 5(5): 389-396.
  • R Core Team. 2013. R: A language and environment for statistical computing.
  • Sharma MK, Denovan-Wright EM, Degrave A, Thisse C, Thisse B, Wright JM. 2004. Sequence, linkage mapping and early developmental expression of the intestinal-type fatty acid-binding protein gene (fabp2) from zebrafish (Danio rerio). Comparat Biochem Physiol Part B: Biochem Molec Biol, 138(4): 391-398.
  • Tamura K, Stecher G, and Kumar S. 2021. MEGA11: Molecular evolutionary genetics analysis version 11. Molec Biol Evolut, 38: 3022-3027.
  • Tran TTH, Nguyen HT, Le BTN, Tran PH, Van Nguyen S, Kim OTP. 2021. Characterization of single nucleotide polymorphism in IGF1 and IGF1R genes associated with growth traits in striped catfish (Pangasianodon hypophthalmus Sauvage, 1878). Aquaculture, 538: 736542.
  • Vandeputte M, Gagnaire PA, Allal F. 2019. The European sea bass: a key marine fish model in the wild and in aquaculture. Anim Genet, 50(3): 195-206.
  • Venkatachalam AB, Parmar MB, Wright JM. 2017. Evolution of the duplicated intracellular lipid-binding protein genes of teleost fishes. Molec Genet Genom, 292(4): 699-727.
  • Venold FF, Penn MH, Thorsen J, Gu J, Kortner TM, Krogdahl Å, Bakke AM. 2013. Intestinal fatty acid binding protein (fabp2) in Atlantic salmon (Salmo salar): Localization and alteration of expression during development of diet induced enteritis. Comparat Biochem Physiol Part A: Molec Integrat Physiol, 164(1): 229-240.
  • Wan L, Dong L, Xiao S, Han Z, Wang X, Wang Z. 2018. Genomewide association study for economic traits in the large yellow croaker with different numbers of extreme phenotypes. J Genet, 97(4): 887-895.
  • Wang Q, Li H, Liu S, Wang G, Wang Y. 2005. Cloning and tissue expression of chicken heart fatty acid-binding protein and intestine fatty acid-binding protein genes. Anim Biotechnol, 16: 191–201.
  • Wang Y, Wang X, Meng X, Wang H, Jiang Z, Qiu X. 2014. Identification of two SNPs in myostatin (MSTN) gene of Takifugu rubripes and their association with growth traits. Molecul Cellular Prob, 28(4): 200-203.
  • Xia JH, Lin G, He X, Liu P, Liu F, Sun F, Yue GH. 2013. Whole genome scanning and association mapping identified a significant association between growth and a SNP in the IFABP-a gene of the Asian seabass. BMC Genom, 14(1): 1-12.
  • Zhang Y, Cao X, Gao J. 2019. Cloning of fatty acid-binding protein 2 (fabp2) in loach (Misgurnus anguillicaudatus) and its expression in response to dietary oxidized fish oil. Comparat Biochem Physiol Part B: Biochem Molec Biol, 229: 26-33.
  • Zhang Y, Zhang J, Ren Y, Lu R, Yang L, Nie G. 2020. Tracing the evolution of fatty acid‐binding proteins (FABPs) in organisms with a heterogeneous fat distribution. FEBS Open Bio, 10(5): 861-872.
  • Zhou Z, Han K, Wu Y, Bai H, Ke Q, Pu F, Xu P. 2019. Genome-wide association study of growth and body-shape-related traits in large yellow croaker (Larimichthys crocea) using ddRAD sequencing. Marine Biotechnol, 21(5): 655-670.
There are 25 citations in total.

Details

Primary Language English
Subjects Hydrobiology
Journal Section Research Articles
Authors

Emel Özcan Gökçek 0000-0001-6566-7680

Raziye Işık 0000-0003-2982-6562

Publication Date March 1, 2023
Submission Date December 23, 2022
Acceptance Date January 25, 2023
Published in Issue Year 2023 Volume: 6 Issue: 2

Cite

APA Özcan Gökçek, E., & Işık, R. (2023). Intestinal Fatty Acid Binding Protein Gene Variation in European Sea Bass (Dicentrarchus labrax). Black Sea Journal of Agriculture, 6(2), 143-147. https://doi.org/10.47115/bsagriculture.1223593
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